Aging-TCA

Select Gene and Sample

Select Old Sample

Choose Gene:

Select Gene and Sample

Select Young Sample

Choose Gene:

Feature plot
Violin Plot

Feature plot
Violin Plot

UMAP
UMAP

UMAP
UMAP

Select Gene and Sample

Select Old Sample

Choose Gene:

Select Gene and Sample

Select Young Sample

Choose Gene:

Feature plot
Violin Plot

Feature plot
Violin Plot

UMAP
UMAP

UMAP
UMAP

Select Gene and Sample

Select Old Sample

Choose Gene:

Select Gene and Sample

Select Young Sample

Choose Gene:

Feature plot
Violin Plot

Feature plot
Violin Plot

UMAP
UMAP

UMAP
UMAP

Select Gene

Choose Gene:

Download Volcano Download DEG Table

Select Gene

Choose Gene:

Download Volcano Download DEG Table

Select Gene

Choose Gene:

Download Volcano Download DEG Table

Choose Celltpye

select emitter_receiver

select ligands or receptors

Choose Net Type

Old net

Young net

Choose Net

Choose Celltpye

select emitter_receiver

select ligands or receptors

Choose Net Type

Old net

Young net

Choose Net

Choose Celltpye

select emitter_receiver

select ligands or receptors

Choose Net Type

Old net

Young net

UP
Down

Up
Down

Human_Gene:

Human pseudotime trajectory

Gene:

Monkey pseudotime trajectory

Gene:

Mouse pseudotime trajectory

Gene:

DownMarker

Choose Marker File

Browse...

Please upload the Marker Gene File generated by the FindMarker function.

Species selection

Human

Mouse

Monkey

Download Example Files

UMAP File input

Browse...

Please upload the UMAP coordinate file containing XY coordinates for each cell.

Old Sample

Select Old Sample

Choose Gene:

Young Sample

Select Young Sample

Choose Gene:

transcriptomics

transcriptomics2

transcriptomics3
transcriptomics

transcriptomics4
transcriptomics

Download (csv)

Select Cell Type

Choose Gene:

Download Alternatives 1

Time series
Time series

Top CO-expression gene
Top CO-expression gene

Sample Selection

Select Sample

Choose Gene:

Download Alternatives 1

Sample Selection

Select Sample

Choose Gene:

Download Alternatives 2

Feature plot
Violin Plot

Feature plot
Violin Plot

UMAP
UMAP

UMAP
UMAP

Help and Support

Q:What's the format of input files for testicular cell-type autoidenttification?

A:The input markers file (markers.tsv) has the following column names: p_val, avg_log2FC, pct.1, pct.2, p_val_adj, cluster, gene. The input UMAP file (umap.txt) contains the following column names: UMAP_1, UMAP_2, cell_type.